Consultation Overview
Molecular Dynamics
In this service, I will guide you through the steps for molecular dynamics simulations with gromacs or htmd, all the way starting from the raw protein structure files, forcefield selection and equilibration, to production runs and various analyses (RMSD, RMSF, and Rg)
Additionally, simulations with ligands are also my expertise, which further analysis with ligand interactions and mmPBSA/GBSA calculations can be accomodated.
I am also open to help, for the setting up of Ubuntu/compilation of gromacs/htmd for you to reproduce/run the simulations yourself!
Service Details
What's Included
- Video consultation
- Personalized guidance and advice
- Session notes and recommendations
- Follow-up support via email
Pricing Options
- Single Session ₹10
- Full Project ₹20
About Tan Hao Dong
I am a graduate researcher in the molecular medicine department, Universiti Malaya. I have ample experience in bioinformatics/structural computational simulations including in molecular docking (VINA docking) and molecular dynamics (GROMACS and HTMD). Furthermore, I have conducted two randomized, placebo-controlled clinical trials. Some additional skills include include PLIP for ligand interactions, mmPBSA for mmgbsa/mmpbsa energetics, and R coding for data processing and plotting.
Experience
Bioinformatics
Specialized expertise in bioinformatics with 3 years of professional experience.